ProbCons
ProbCons is a novel tool for generating multiple alignments of protein sequences using a combination of probabilistic modeling and consistency-based alignment techniques.
A manual for ProbCons is available. [pdf]
ProbCons home page here.
INPUT = dna or protein sequences in multiple fasta format (MFA).
Test input file (amino acid): probcons_input.txt
If you use ProbCons, please cite:
Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340.[pdf]
Copyright © 2004-2009 Chuong Do
If you would like to add a tool, or a feature you need, please let us know.
SDSC - UC San Diego, MC 0505 - 9500 Gilman Drive - La Jolla, CA 92093-0505
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