Cipres Science Gateway

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SEQBOOT

SEQBOOT reads in a data set, and produces multiple data sets from it by bootstrap resampling. Since most programs in the current version of the package allow processing of multiple data sets, this can be used together with the consensus tree program CONSENSE to do bootstrap (or delete-half-jackknife) analyses with most of the methods in this package. This program also allows the Archie/Faith technique of permutation of species within characters. It can also rewrite a data set to convert it from between the PHYLIP Interleaved and Sequential forms, and into a preliminary version of a new XML sequence alignment format which is under development and which is described in the SEQBOOT documentation web page. Part of Phylip.

© Copyright 1991-2006 by the University of Washington. Written by Joseph Felsenstein. Edited by NGBW team.

Manual: http://evolution.genetics.washington.edu/phylip/doc/seqboot.html

INPUT: Aligned DNA or Protein sequences (Character Matrix)

If there is a tool or a feature you need, you can add it yourself or let us know.

 

TEST DATA SET

    5    6
Alpha     AACAAC
Beta      AACCCC
Gamma     ACCAAC
Delta     CCACCA
Epsilon   CCAAAC

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CONTENTS OF OUTPUT FILE

(If Replicates are set to 10 and seed to 4333)

    5     6
Alpha     ACAAAC
Beta      ACCCCC
Gamma     ACAAAC
Delta     CACCCA
Epsilon   CAAAAC

    5     6

Alpha     AAAACC
Beta      AACCCC
Gamma     CCAACC
Delta     CCCCAA
Epsilon   CCAACC

    5     6
Alpha     ACAAAC
Beta      ACCCCC
Gamma     CCAAAC
Delta     CACCCA
Epsilon   CAAAAC

    5     6
Alpha     ACCAAA
Beta      ACCCCC
Gamma     ACCAAA
Delta     CAACCC
Epsilon   CAAAAA

    5     6
Alpha     ACAAAC
Beta      ACCCCC
Gamma     ACAAAC
Delta     CACCCA
Epsilon   CAAAAC

    5     6
Alpha     AAAACA
Beta      AAAACC
Gamma     AAACCA
Delta     CCCCAC
Epsilon   CCCCAA

    5     6
Alpha     AAACCC
Beta      CCCCCC
Gamma     AAACCC
Delta     CCCAAA
Epsilon   AAACCC

    5     6
Alpha     AAAACC
Beta      AACCCC
Gamma     AAAACC
Delta     CCCCAA
Epsilon   CCAACC

    5     6
Alpha     AAAAAC
Beta      AACCCC
Gamma     CCAAAC
Delta     CCCCCA
Epsilon   CCAAAC

    5     6
Alpha     AACCAC
Beta      AACCCC
Gamma     AACCAC
Delta     CCAACA
Epsilon   CCAAAC

If there is a tool or a feature you need, please let us know.