hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /isilon/ngbw/8ball/PFAM/Pfam_ls
Sequence file:            seqfile.fasta
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Query sequence: 2CYP:A|PDBID|CHAIN|SEQUENCE
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
peroxidase      Peroxidase                              186.2    8.1e-53   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
peroxidase        1/1      22   254 ..     1   361 []   186.2  8.1e-53

Alignments of top-scoring domains:
peroxidase: domain 1 of 1, from 22 to 254: score 186.2, E = 8.1e-53
                   *->VrsvvRAwfKLTqsavgpardprmaasLlRLhFHDCFVqGCDaSvdD
                      V +++    KL +++ +  +++++++ L+RL++H  ++ + +     
  2CYP:A|PDB    22    VYNAI--ALKLREDDEY-DNYIGYGPVLVRLAWHTSGTWDKH----- 60   

                   IaLKkILSGLvqLVTAWSASTFRLLdsgganGgriRftsEkdappNlpsn
                                           +++gg+ Gg+ Rf+ E + p N+  +
  2CYP:A|PDB    61 ------------------------DNTGGSYGGTYRFKKEFNDPSNA--G 84   

                   slrGfeviddIKaalEafaaCPgvVSCADIlALAARDaVelakGGPsvwp
                   +  Gf+++++I +      + P ++S  D+  L+++ aV  +  GP  +p
  2CYP:A|PDB    85 LQNGFKFLEPIHK------EFP-WISSGDLFSLGGVTAVQEM-QGPK-IP 125  

                   VplGRrDgrtssaseeangnLPpPaDGFRnytssldqLlskFaaakGLna
                    + GR D + + +++  ng+LP+        + ++d  ++ F +++++n+
  2CYP:A|PDB   126 WRCGRVD-TPEDTTP-DNGRLPDA-------DKDADYVRTFF-QRLNMND 165  

                   kDlVALISGAHTiGrahCssFggsdRLYNFsgtgdpDPtldpayAaqLGE
                   +++VAL  GAH +G++h  ++                             
  2CYP:A|PDB   166 REVVAL-MGAHALGKTHLKNS----------------------------- 185  

                   Pap.erqkCPqnggsgggkgndtnlvpLDpvwTgTPntFDNsYykNLldm
                     + e                        ++w    n+F+N +y NLl+ 
  2CYP:A|PDB   186 --GyE------------------------GPWGAANNVFTNEFYLNLLNE 209  

                   .t.lew.pa.a.qwtsegDrtgpkwtatrgkGLLtSDqaLftAEVYAdda
                   +++le++ a+++qw+s+            g ++L++D  L +        
  2CYP:A|PDB   210 dWkLEKnDAnNeQWDSKS-----------GYMMLPTDYSLIQ-------- 240  

                   dprTraiVAWKVMLdrfann<-*
                   dp + +iV      +++an+   
  2CYP:A|PDB   241 DPKYLSIV------KEYAND    254  

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