WARNING: repeat found in sequence[23] AHA0217910.1
	Length changed from 714 -> 586
WARNING: repeat found in sequence[27] AHA0412500.1
	Length changed from 690 -> 668
WARNING: repeat found in sequence[32] AHB0240330.1
	Length changed from 589 -> 565
WARNING: repeat found in sequence[33] AHB0742300.1
	Length changed from 1305 -> 1224
WARNING: repeat found in sequence[286] EVM0036252.1
	Length changed from 373 -> 286
WARNING: repeat found in sequence[289] EVM0037415.1
	Length changed from 368 -> 344
WARNING: repeat found in sequence[337] EVM0062548.1
	Length changed from 333 -> 187
WARNING: repeat found in sequence[344] EVM0067936.1
	Length changed from 525 -> 503
WARNING: repeat found in sequence[562] aradu.A47FP
	Length changed from 403 -> 216
WARNING: repeat found in sequence[812] araip.1G97J
	Length changed from 406 -> 345
WARNING: repeat found in sequence[866] araip.PE7UC
	Length changed from 311 -> 256
WARNING: repeat found in sequence[869] araip.Q8TW2
	Length changed from 368 -> 344
WARNING: repeat found in sequence[1182] NC6G0255840
	Length changed from 336 -> 285
WARNING: repeat found in sequence[1184] NC6G0255860
	Length changed from 390 -> 355
WARNING: Repeats found. If you do not want them removed us -noremoverepeat option
WARNING: 30.89% of sequence removed/missing for [23] AHA0217910.1
WARNING: 30.07% of sequence removed/missing for [30] AHA0734470.1
WARNING: 25.51% of sequence removed/missing for [176] AHB0623660.1
WARNING: 25.15% of sequence removed/missing for [179] AHA1027300.1
WARNING: 84.15% of sequence removed/missing for [186] AHA0627370.1
WARNING: 86.54% of sequence removed/missing for [187] AHB0731480.1
WARNING: 34.22% of sequence removed/missing for [188] AHA0827900.1
WARNING: 61.65% of sequence removed/missing for [191] AHA1046750.1
WARNING: 66.07% of sequence removed/missing for [193] AHA0500050.1
WARNING: Fully removed sequence [ 199] AHA1003120.1
WARNING: Fully removed sequence [ 203] AHB0235580.1
WARNING: 30.91% of sequence removed/missing for [223] EVM0009211.1
WARNING: 35.48% of sequence removed/missing for [329] EVM0058158.1
WARNING: 39.37% of sequence removed/missing for [347] EVM0070246.1
WARNING: 39.05% of sequence removed/missing for [374] Glyma.02G293400.1
WARNING: 25.53% of sequence removed/missing for [377] Glyma.03G002300.1
WARNING: 37.53% of sequence removed/missing for [399] Glyma.05G123000.1
WARNING: 46.86% of sequence removed/missing for [403] Glyma.05G165800.1
WARNING: 48.12% of sequence removed/missing for [417] Glyma.06G168400.1
WARNING: 31.05% of sequence removed/missing for [422] Glyma.06G307700.1
WARNING: 46.03% of sequence removed/missing for [428] Glyma.07G161100.1
WARNING: 40.91% of sequence removed/missing for [450] Glyma.09G127100.1
WARNING: 71.67% of sequence removed/missing for [462] Glyma.10G113800.1
WARNING: 52.04% of sequence removed/missing for [464] Glyma.10G171000.1
WARNING: 59.38% of sequence removed/missing for [465] Glyma.10G171100.1
WARNING: 58.63% of sequence removed/missing for [466] Glyma.10G171200.1
WARNING: 25.41% of sequence removed/missing for [471] Glyma.12G097100.1
WARNING: 28.99% of sequence removed/missing for [481] Glyma.13G310100.1
WARNING: 25.84% of sequence removed/missing for [499] Glyma.15G139000.1
WARNING: 26.67% of sequence removed/missing for [503] Glyma.16G031400.1
WARNING: 41.49% of sequence removed/missing for [504] Glyma.16G031900.1
WARNING: 25.64% of sequence removed/missing for [517] Glyma.17G222300.1
WARNING: 55.58% of sequence removed/missing for [524] Glyma.18G124700.1
WARNING: 33.67% of sequence removed/missing for [533] Glyma.19G020600.1
WARNING: 69.06% of sequence removed/missing for [629] aradu.ZN23M
WARNING: 74.73% of sequence removed/missing for [755] arahy.NL2IIL.1
WARNING: 26.96% of sequence removed/missing for [768] arahy.SGU002.1
WARNING: 66.39% of sequence removed/missing for [795] arahy.WH2E03.1
WARNING: 47.66% of sequence removed/missing for [881] araip.V6VZI
WARNING: 25.24% of sequence removed/missing for [898] araip.Z18JU
WARNING: 81.24% of sequence removed/missing for [905] arath.AT1G55600.1
WARNING: 58.10% of sequence removed/missing for [974] vitvi.GSVIVT01001286001
WARNING: 26.78% of sequence removed/missing for [977] vitvi.GSVIVT01008046001
WARNING: 38.62% of sequence removed/missing for [980] vitvi.GSVIVT01010525001
WARNING: 32.73% of sequence removed/missing for [982] vitvi.GSVIVT01011472001
WARNING: 27.16% of sequence removed/missing for [988] vitvi.GSVIVT01019109001
WARNING: 41.18% of sequence removed/missing for [989] vitvi.GSVIVT01019419001
WARNING: 33.33% of sequence removed/missing for [991] vitvi.GSVIVT01020060001
WARNING: 29.50% of sequence removed/missing for [993] vitvi.GSVIVT01021252001
WARNING: 29.47% of sequence removed/missing for [994] vitvi.GSVIVT01021397001
WARNING: 25.39% of sequence removed/missing for [997] vitvi.GSVIVT01022245001
WARNING: 27.72% of sequence removed/missing for [1000] vitvi.GSVIVT01024624001
WARNING: 62.81% of sequence removed/missing for [1001] vitvi.GSVIVT01025491001
WARNING: 37.64% of sequence removed/missing for [1003] vitvi.GSVIVT01026965001
WARNING: 35.32% of sequence removed/missing for [1004] vitvi.GSVIVT01026969001
WARNING: 26.86% of sequence removed/missing for [1006] vitvi.GSVIVT01028129001
WARNING: 51.99% of sequence removed/missing for [1007] vitvi.GSVIVT01028147001
WARNING: 25.68% of sequence removed/missing for [1008] vitvi.GSVIVT01028244001
WARNING: 57.14% of sequence removed/missing for [1010] vitvi.GSVIVT01028823001
WARNING: 40.82% of sequence removed/missing for [1012] vitvi.GSVIVT01029688001
WARNING: 35.44% of sequence removed/missing for [1013] vitvi.GSVIVT01030046001
WARNING: 40.79% of sequence removed/missing for [1014] vitvi.GSVIVT01030174001
WARNING: 29.43% of sequence removed/missing for [1015] vitvi.GSVIVT01030258001
WARNING: 27.31% of sequence removed/missing for [1016] vitvi.GSVIVT01030453001
WARNING: 40.28% of sequence removed/missing for [1017] vitvi.GSVIVT01032661001
WARNING: 27.92% of sequence removed/missing for [1018] vitvi.GSVIVT01032662001
WARNING: 31.32% of sequence removed/missing for [1019] vitvi.GSVIVT01033063001
WARNING: 37.82% of sequence removed/missing for [1021] vitvi.GSVIVT01033194001
WARNING: 25.74% of sequence removed/missing for [1022] vitvi.GSVIVT01033195001
WARNING: 31.10% of sequence removed/missing for [1023] vitvi.GSVIVT01034148001
WARNING: 38.19% of sequence removed/missing for [1024] vitvi.GSVIVT01034968001
WARNING: 37.02% of sequence removed/missing for [1026] vitvi.GSVIVT01035884001
WARNING: 35.85% of sequence removed/missing for [1028] vitvi.GSVIVT01035965001
WARNING: 28.63% of sequence removed/missing for [1030] vitvi.GSVIVT01037686001
WARNING: 78.30% of sequence removed/missing for [1032] LOC_Os01g08710.IIc
WARNING: 62.13% of sequence removed/missing for [1033] LOC_Os01g09080.IIb
WARNING: 62.56% of sequence removed/missing for [1034] LOC_Os01g09100.IIc
WARNING: 60.72% of sequence removed/missing for [1035] LOC_Os01g14440.IIb
WARNING: 66.33% of sequence removed/missing for [1036] LOC_Os01g18584.IIb
WARNING: 71.14% of sequence removed/missing for [1037] LOC_Os01g40260.IIc
WARNING: 69.68% of sequence removed/missing for [1038] LOC_Os01g40430.IIb
WARNING: 56.57% of sequence removed/missing for [1039] LOC_Os01g43550.IIe
WARNING: 58.05% of sequence removed/missing for [1040] LOC_Os01g43650.IIc
WARNING: 55.47% of sequence removed/missing for [1041] LOC_Os01g46800.III
WARNING: 80.52% of sequence removed/missing for [1042] LOC_Os01g47560.IIc
WARNING: 62.04% of sequence removed/missing for [1043] LOC_Os01g51690.IIc
WARNING: 68.03% of sequence removed/missing for [1044] LOC_Os01g53040.IIe
WARNING: 62.20% of sequence removed/missing for [1045] LOC_Os01g53260.IIc
WARNING: 71.52% of sequence removed/missing for [1046] LOC_Os01g54600.IIe
WARNING: 90.57% of sequence removed/missing for [1047] LOC_Os01g60490.III
WARNING: 71.73% of sequence removed/missing for [1048] LOC_Os01g60520.III
WARNING: 78.13% of sequence removed/missing for [1049] LOC_Os01g60540.III
WARNING: 75.42% of sequence removed/missing for [1050] LOC_Os01g60600.III
WARNING: 73.57% of sequence removed/missing for [1051] LOC_Os01g60640.III
WARNING: 48.29% of sequence removed/missing for [1052] LOC_Os01g61080.I
WARNING: 84.24% of sequence removed/missing for [1053] LOC_Os01g62510
WARNING: 72.82% of sequence removed/missing for [1054] LOC_Os01g62514
WARNING: 72.93% of sequence removed/missing for [1055] LOC_Os01g74140
WARNING: 44.25% of sequence removed/missing for [1056] LOC_Os02g08440.IIa
WARNING: 62.88% of sequence removed/missing for [1057] LOC_Os02g16540.IIe
WARNING: 64.43% of sequence removed/missing for [1058] LOC_Os02g26430.IId
WARNING: 64.55% of sequence removed/missing for [1059] LOC_Os02g43560.IIc
WARNING: 58.70% of sequence removed/missing for [1060] LOC_Os02g47060.IIe
WARNING: 71.52% of sequence removed/missing for [1061] LOC_Os02g53100.IIb
WARNING: 60.00% of sequence removed/missing for [1062] LOC_Os03g20550.III
WARNING: 77.25% of sequence removed/missing for [1063] LOC_Os03g21710.III
WARNING: 31.45% of sequence removed/missing for [1064] LOC_Os03g33012.I
WARNING: 56.08% of sequence removed/missing for [1065] LOC_Os03g45450.Undifiend
WARNING: 47.55% of sequence removed/missing for [1066] LOC_Os03g53050.IId
WARNING: 64.65% of sequence removed/missing for [1067] LOC_Os03g55080.IIc
WARNING: 57.88% of sequence removed/missing for [1068] LOC_Os03g55164.I
WARNING: 63.68% of sequence removed/missing for [1069] LOC_Os03g58420.IId
WARNING: 78.81% of sequence removed/missing for [1070] LOC_Os03g63810.IIe
WARNING: 40.18% of sequence removed/missing for [1071] LOC_Os04g21950.Iid
WARNING: 77.35% of sequence removed/missing for [1072] LOC_Os04g39570.I
WARNING: 57.60% of sequence removed/missing for [1073] LOC_Os04g46060.IIc
WARNING: 55.06% of sequence removed/missing for [1074] LOC_Os04g50920.IIe
WARNING: 38.19% of sequence removed/missing for [1075] LOC_Os04g51560.IId
WARNING: 69.51% of sequence removed/missing for [1076] LOC_Os05g03900.IIe
WARNING: 63.94% of sequence removed/missing for [1077] LOC_Os05g04640.IIb
WARNING: 59.28% of sequence removed/missing for [1078] LOC_Os05g09020.IIc
WARNING: 60.71% of sequence removed/missing for [1079] LOC_Os05g14370.III
WARNING: 73.62% of sequence removed/missing for [1080] LOC_Os05g25770.III
WARNING: 44.97% of sequence removed/missing for [1081] LOC_Os05g27730.I
WARNING: 64.69% of sequence removed/missing for [1082] LOC_Os05g39720.I
WARNING: 72.81% of sequence removed/missing for [1083] LOC_Os05g40060.III
WARNING: 82.86% of sequence removed/missing for [1084] LOC_Os05g40070.III
WARNING: 76.52% of sequence removed/missing for [1085] LOC_Os05g40080.III
WARNING: 81.22% of sequence removed/missing for [1086] LOC_Os05g45230
WARNING: 56.56% of sequence removed/missing for [1087] LOC_Os05g46020.IIc
WARNING: 73.51% of sequence removed/missing for [1088] LOC_Os05g49100.IIc
WARNING: 63.20% of sequence removed/missing for [1089] LOC_Os05g49210.IIb
WARNING: 59.21% of sequence removed/missing for [1090] LOC_Os05g49620.III
WARNING: 80.52% of sequence removed/missing for [1091] LOC_Os05g50610.IIc
WARNING: 53.50% of sequence removed/missing for [1092] LOC_Os05g50700.IIe
WARNING: 48.96% of sequence removed/missing for [1093] LOC_Os06g05380.IIb
WARNING: 75.96% of sequence removed/missing for [1094] LOC_Os06g06360.III
WARNING: 68.50% of sequence removed/missing for [1095] LOC_Os06g30860.IIe
WARNING: 52.02% of sequence removed/missing for [1096] LOC_Os06g44010.IIa
WARNING: 63.10% of sequence removed/missing for [1097] LOC_Os07g02060.IIc
WARNING: 76.15% of sequence removed/missing for [1098] LOC_Os07g27670.III
WARNING: 54.21% of sequence removed/missing for [1099] LOC_Os07g39480.I
WARNING: 42.82% of sequence removed/missing for [1100] LOC_Os07g40570.I
WARNING: 77.48% of sequence removed/missing for [1101] LOC_Os07g48260.III
WARNING: 43.00% of sequence removed/missing for [1106] LOC_Os08g13840.IId
WARNING: 73.09% of sequence removed/missing for [1107] LOC_Os08g17400.I
WARNING: 52.04% of sequence removed/missing for [1108] LOC_Os08g29660.III
WARNING: 28.93% of sequence removed/missing for [1109] LOC_Os08g38990.I
WARNING: 57.04% of sequence removed/missing for [1110] LOC_Os09g09630.III
WARNING: 58.17% of sequence removed/missing for [1111] LOC_Os09g16510.III
WARNING: 53.52% of sequence removed/missing for [1112] LOC_Os09g25060.IIa
WARNING: 60.69% of sequence removed/missing for [1113] LOC_Os09g25070.IIa
WARNING: 32.07% of sequence removed/missing for [1114] LOC_Os09g30400.I
WARNING: 71.01% of sequence removed/missing for [1115] LOC_Os10g18099.III
WARNING: 65.22% of sequence removed/missing for [1116] LOC_Os10g42850.IIe
WARNING: 26.75% of sequence removed/missing for [1121] LOC_Os11g02540.III
WARNING: 59.92% of sequence removed/missing for [1122] LOC_Os11g29870.IIc
WARNING: 57.14% of sequence removed/missing for [1123] LOC_Os11g45850.III
WARNING: 73.43% of sequence removed/missing for [1124] LOC_Os11g45920.III
WARNING: 85.96% of sequence removed/missing for [1125] LOC_Os12g01180.NOVEL
WARNING: 32.55% of sequence removed/missing for [1130] LOC_Os12g02470.III
WARNING: 47.41% of sequence removed/missing for [1131] LOC_Os12g32250.I
WARNING: 46.58% of sequence removed/missing for [1132] LOC_Os12g40570.IId
WARNING: 42.54% of sequence removed/missing for [1133] NC10G0044870
WARNING: 52.16% of sequence removed/missing for [1134] NC10G0045170
WARNING: 55.89% of sequence removed/missing for [1135] NC10G0046400
WARNING: 62.59% of sequence removed/missing for [1136] NC10G0166090
WARNING: 55.04% of sequence removed/missing for [1137] NC10G0166550
WARNING: 42.07% of sequence removed/missing for [1138] NC10G0266390
WARNING: 29.34% of sequence removed/missing for [1139] NC11G0015190
WARNING: 31.09% of sequence removed/missing for [1140] NC11G0016410
WARNING: 94.14% of sequence removed/missing for [1142] NC12G0189280
WARNING: 56.56% of sequence removed/missing for [1144] NC13G0028430
WARNING: 63.32% of sequence removed/missing for [1145] NC13G0029790
WARNING: 40.69% of sequence removed/missing for [1146] NC13G0029800
WARNING: 66.09% of sequence removed/missing for [1147] NC14G0010670
WARNING: 67.47% of sequence removed/missing for [1148] NC14G0010880
WARNING: 26.97% of sequence removed/missing for [1149] NC14G0281570
WARNING: 65.75% of sequence removed/missing for [1150] NC1G0106510
WARNING: 57.25% of sequence removed/missing for [1152] NC1G0128080
WARNING: 30.86% of sequence removed/missing for [1153] NC1G0180430
WARNING: 39.73% of sequence removed/missing for [1154] NC2G0000460
WARNING: 27.64% of sequence removed/missing for [1155] NC2G0003130
WARNING: 28.43% of sequence removed/missing for [1156] NC2G0009600
WARNING: 37.06% of sequence removed/missing for [1157] NC2G0053530
WARNING: 65.98% of sequence removed/missing for [1158] NC2G0055120
WARNING: 47.25% of sequence removed/missing for [1159] NC2G0125890
WARNING: 54.33% of sequence removed/missing for [1161] NC2G0192270
WARNING: 35.44% of sequence removed/missing for [1162] NC2G0264950
WARNING: 25.25% of sequence removed/missing for [1163] NC3G0207290
WARNING: 39.47% of sequence removed/missing for [1164] NC3G0229080
WARNING: 44.88% of sequence removed/missing for [1165] NC3G0230020
WARNING: 68.64% of sequence removed/missing for [1166] NC4G0022050
WARNING: 83.29% of sequence removed/missing for [1167] NC4G0151120
WARNING: 40.96% of sequence removed/missing for [1168] NC4G0199920
WARNING: 47.06% of sequence removed/missing for [1170] NC4G0199940
WARNING: 44.04% of sequence removed/missing for [1172] NC4G0199960
WARNING: 68.62% of sequence removed/missing for [1173] NC5G0050000
WARNING: 57.88% of sequence removed/missing for [1174] NC5G0057430
WARNING: 47.55% of sequence removed/missing for [1175] NC5G0160660
WARNING: 55.05% of sequence removed/missing for [1176] NC5G0183560
WARNING: 56.81% of sequence removed/missing for [1177] NC5G0183570
WARNING: 39.79% of sequence removed/missing for [1178] NC5G0262360
WARNING: 35.29% of sequence removed/missing for [1179] NC5G0267550
WARNING: 55.56% of sequence removed/missing for [1181] NC6G0255700
WARNING: 26.76% of sequence removed/missing for [1184] NC6G0255860
WARNING: 32.00% of sequence removed/missing for [1186] NC6G0255980
WARNING: 27.39% of sequence removed/missing for [1187] NC6G0255990
WARNING: 32.99% of sequence removed/missing for [1188] NC7G0235250
WARNING: 60.60% of sequence removed/missing for [1196] NC8G0215720
WARNING: 40.52% of sequence removed/missing for [1197] NC8G0219500
WARNING: 48.61% of sequence removed/missing for [1198] NC8G0299520
WARNING: 43.62% of sequence removed/missing for [1199] NC9G0013020
WARNING: 38.25% of sequence removed/missing for [1200] NC9G0147240
WARNING: 29.76% of sequence removed/missing for [1201] NC9G0169230
WARNING: 35.56% of sequence removed/missing for [1202] Potri.001G002400.1
WARNING: 55.30% of sequence removed/missing for [1208] Potri.001G208600.1
WARNING: 33.33% of sequence removed/missing for [1209] Potri.001G328000.1
WARNING: 31.82% of sequence removed/missing for [1227] Potri.003G132700.1
WARNING: 61.15% of sequence removed/missing for [1231] Potri.003G222500.1
WARNING: 32.79% of sequence removed/missing for [1235] Potri.004G072000.1
WARNING: 29.61% of sequence removed/missing for [1270] Potri.013G086000.1
WARNING: 42.28% of sequence removed/missing for [1271] Potri.013G090300.1
WARNING: 76.47% of sequence removed/missing for [1274] Potri.014G009500.1
WARNING: 40.92% of sequence removed/missing for [1285] Potri.015G064100.1
WARNING: 32.90% of sequence removed/missing for [1291] Potri.017G079500.1
WARNING: 27.85% of sequence removed/missing for [1293] Potri.017G104800.1
WARNING: 27.91% of sequence removed/missing for [1294] Potri.017G149000.1
WARNING: 26.92% of sequence removed/missing for [1295] Potri.018G008500.1
WARNING: 33.21% of sequence removed/missing for [1297] Potri.018G019700.1