RPS-BLAST 2.2.17 [Aug-26-2007]

Database: Pfam.v.22.0 
           9318 sequences; 1,769,994 total letters

Searching..................................................done

Query= 2CYP:A|PDBID|CHAIN|SEQUENCE
         (294 letters)



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|CDD|84554 pfam00141, peroxidase, Peroxidase..                     144   5e-36
gnl|CDD|69183 pfam05645, RNA_pol_Rpc82, RNA polymerase III subun...    25   5.4  
gnl|CDD|86459 pfam03853, YjeF_N, YjeF-related protein N-terminus..     25   6.5  
gnl|CDD|70603 pfam07146, DUF1389, Protein of unknown function (D...    25   6.9  
gnl|CDD|87277 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Fami...    25   9.1  

>gnl|CDD|84554 pfam00141, peroxidase, Peroxidase..
          Length = 203

 Score =  144 bits (366), Expect = 5e-36
 Identities = 57/227 (25%), Positives = 87/227 (38%), Gaps = 44/227 (19%)

Query: 38  NYIGYGPVLVRLAWHTSGTWDKH----DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLE 93
              G    L+RL +H             + GG+         E + P N  L  GF+ L+
Sbjct: 11  RDPGPAASLLRLHFHDCFVQGCDASVLLDRGGA------LAPEKDAPPNLNLLRGFEVLD 64

Query: 94  PIHKEF-----PWISSGDLFSLGGVTAVQEMQGPKIPWRCGRVD-TPEDTTPDNGRLPDA 147
           PI           +S  D+ +L    AV+   GP  P   GR D T        G LP  
Sbjct: 65  PIKAALEAACPGVVSCADILALAARDAVELAGGPSWPVPLGRRDGTTSSADGAFGNLPPP 124

Query: 148 DKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSGYEGPWGAANNVFTNEFYLNLL 207
              A+ + + F R  +N  ++VAL GAH +G+ H  ++            F N +++NLL
Sbjct: 125 FASAEQLLSDFARKGLNAPDLVALSGAHTIGRAHCSST---------PGTFDNSYFVNLL 175

Query: 208 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYAND 254
                               G  +L +D +L  DP+   IV  +A +
Sbjct: 176 R-------------------GRGLLGSDQALRADPRTRDIVDRFALN 203


>gnl|CDD|69183 pfam05645, RNA_pol_Rpc82, RNA polymerase III subunit RPC82. This
           family consists of several DNA-directed RNA polymerase
           III polypeptides which are related to the Saccharomyces
           cerevisiae RPC82 protein. RNA polymerase C (III)
           promotes the transcription of tRNA and 5S RNA genes. In
           Saccharomyces cerevisiae, the enzyme is composed of 15
           subunits, ranging from 160 to about 10 kDa..
          Length = 273

 Score = 25.3 bits (55), Expect = 5.4
 Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 24/124 (19%)

Query: 182 LKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQD 241
           L  +G        N   T     N      ++ +N  + ++ D + G  +  +   + Q 
Sbjct: 130 LSMTGLTQSI---NESTTPPVTFN------EITRNLTDLDEGDREGGTNISLSL--INQH 178

Query: 242 PKYLS-----IVKEYANDQDKFFKDFSKAFEKL----LENGI--TFPKDAPSPFIFKTLE 290
            K L+      +++  +   ++  D+S+  E L     E+ I   F   A    IF+ L 
Sbjct: 179 LKLLASSPLGFLRKVGDSGGEYIVDYSRLIEVLRSAEYESIIAERFGPRAAR--IFRLLR 236

Query: 291 EQGL 294
           E+GL
Sbjct: 237 EKGL 240


>gnl|CDD|86459 pfam03853, YjeF_N, YjeF-related protein N-terminus..
          Length = 169

 Score = 24.9 bits (54), Expect = 6.5
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 131 VDTPEDTTPDNGRLPDADKDADYVRTF 157
           VD P     D G + +    AD   TF
Sbjct: 137 VDVPSGLDVDTGAVLEGAVKADLTVTF 163


>gnl|CDD|70603 pfam07146, DUF1389, Protein of unknown function (DUF1389). This
           family consists of several hypothetical bacterial
           proteins which seem to be specific to Chlamydia
           pneumoniae. Members of this family are typically around
           400 residues in length. The function of this family is
           unknown..
          Length = 357

 Score = 25.0 bits (54), Expect = 6.9
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 206 LLNEDWKLEKNDANNEQWDSKS 227
           L  + ++  K  A N +WD   
Sbjct: 229 LTRDVFQHLKYKALNGEWDHSD 250


>gnl|CDD|87277 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88.
           Unsaturated glucuronyl hydrolase catalyses the
           hydrolytic release of unsaturated glucuronic acids from
           oligosaccharides (EC:3.2.1.-) produced by the reactions
           of polysaccharide lyases..
          Length = 349

 Score = 24.5 bits (53), Expect = 9.1
 Identities = 8/56 (14%), Positives = 18/56 (32%)

Query: 200 NEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQ 255
           N +++    +   ++    N   W +      +   Y    D  YL   K + +  
Sbjct: 6   NGYFMKDNTDGKVIDLPPDNRWDWTNGVFLYGMLLAYEYTGDDAYLDYAKAWVDSF 61


  Database: Pfam.v.22.0
    Posted date:  Nov 8, 2007  6:06 PM
  Number of letters in database: 1,769,994
  Number of sequences in database:  9318
  
Lambda     K      H
   0.316    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9318
Number of Hits to DB: 1,905,449
Number of extensions: 144178
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 13
Length of query: 294
Length of database: 1,769,994
Length adjustment: 83
Effective length of query: 211
Effective length of database: 996,600
Effective search space: 210282600
Effective search space used: 210282600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.1 bits)