Welcome to CIPRES!

Your resource for Phylogenetics and
Population Biology

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Fast data analysis on UCSD's Supercomputing Clusters

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You're in Good Company

Over 60,000 scientists have analyzed their data here!

Welcome to CIPRES

We provide a simple interface for popular codes run efficiently on
large computational resources of the NSF ACCESS project.

Please Note: CIPRES will cease operations on 3/31/2026

CIPRES has supported 13,000 publications since 2010

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Phylogenetic Research

From sequence assembly to tree inference, CIPRES provides high performance parallel codes including SPAdes, RAxML, MrBayes, BEAST, BEAST2, IQ-Tree and more. Our Geneious Plugin allows you to run MrBayes, RAxML, and IQ-Tree on CIPRES from within Geneious.

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Population Biology Research

Simplified access to parallel implementations of several popular community codes, including Ima3, Migrate-N, and Parallel Structure.

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On the UCSD Supercomputer

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