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The CIPRES Science Gateway V. 3.3

Please Note: CIPRES is now using a subscription model for all users.

The CIPRES Science Gateway V. 3.3 is a public resource for inference of large phylogenetic trees. It is designed to provide all researchers with access to NSF XSEDE's large computational resources through a simple browser interface. You can also access these same capabilities programatically with the CIPRES REST API. Geneious Prime USERS! Plugin for running MrBayes, RAxML, and IQTree on CIPRES available. raxmlGUI users, you can run raxmlGUI jobs using CIPRES!

High Performance Parallel Codes for Large Tree Inference and Sequence Alignment on XSEDE:
RAxML; RAxML-NG; MrBayes; BEAST; BEAST2; GARLI; MAFFTEPA-ng; ExaBayes; GPhoCS; FastTree, jModelTest2, ModelTest-NG, MUSCLE; PAUP, ParallelStructure, PartitionFinder3 (now embedded in IQTree), IMa3, IQ Tree, Migrate-N, PAUP*; Astral, PhyloBayes; Bali-Phy; StatAlign and RevBayes.

Serial Codes for Sequence Alignment:

Join the CIPRES Google Group for questions and problems.


StatAlign is now available
January 05, 2023 - 9:53 am
PREQUAL and Divvier are now available.
August 05, 2022 - 2:24 pm

Locations of last 1000 users


CIPRES – Cyberinfrastructure for Phylogenetic Research