Status

Recent Announcements

Service restored

The system was down due to an unexpected issue. All systems are functioning normally now.

read moreSeptember 03, 2024 - 4:56 pm
CIPRES now offers ASTRAL-PRO and ASTRAL Hybrid

CIPRES now offers two new ASTRAL codes from the new ASTER package developed by Chao Zhang and Siavash Mirarab.
The code developers recommend that all ASTRAL users switch to the new codes: ASTRAL-Hybrid or ASTRAL-PRO.

ASTRAL-Hybrid is an upgraded, faster version of ASTRAL. It takes into account gene tree branch lengths and branch supports, making ASTRAL-Hybrid more accurate than ASTRAL.

ASTRAL-PRO is a special-purpose version of ASTRAL for PaRalogs & Orthologs. This is suitable for species tree inference from multi-copy gene family trees

read moreMay 31, 2024 - 9:37 am
CIPRES now offers Pythia

CIPRES announces the release of Pythia, a code to evaluate how hard it will be to infer a tree from your matrix.

read moreDecember 18, 2023 - 9:54 am
CIPRES now offers SPAdes for de novo DNA assembly

CIPRES now offers SPAdes for de novo genome assembly. SPAdes is designed for bacterial genomes, and has an option for metagenomics as well.
Information and example files can be found here.
Our recent survey showed user interest in genome assembly tools. Please let us know how we can best meet your needs. 

read moreSeptember 01, 2023 - 1:47 pm
MrBayes runs are now 1.5x Faster

MrBayes runs at CIPRES will now be as much as 1.5 times faster by using Simons Foundation's Popeye cluster.

We are grateful to Simons Foundation for allowing us to access this useful resource.

read moreMarch 23, 2023 - 12:26 pm
StatAlign is now available

CIPRES now offers StatAlign a Bayesian program that allows multiple alignments, phylogenetic trees and evolutionary parameters to be co-estimated in a Markov Chain Monte Carlo framework, allowing for reliable quantification of the uncertainty in these estimates.

read moreJanuary 05, 2023 - 9:53 am
PREQUAL and Divvier are now available.

PREQUAL is a tool to do PREalignment QUALity screening of sequnces for sequnece alignment.

Divvier is a tool for filtering or partially filtering out non-homologous sections from aligned sequences.

read moreAugust 05, 2022 - 2:24 pm
Muscle5 is now available

Muscle 5.1 (which has parallel options) is now available.

read moreJune 08, 2022 - 12:26 pm
Rapid parsimony program MPBoot is now available

The rapid parsimony program MPBoot is now available.

read moreMarch 28, 2022 - 3:19 pm
A simple RevBayes interface is now available

Please contact us if you need us to add features.

read moreFebruary 04, 2022 - 12:35 pm
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